# # Licensed to the Apache Software Foundation (ASF) under one or more # contributor license agreements. See the NOTICE file distributed with # this work for additional information regarding copyright ownership. # The ASF licenses this file to You under the Apache License, Version 2.0 # (the "License"); you may not use this file except in compliance with # the License. You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. # from distutils.version import LooseVersion import unittest import decimal import numpy as np import pandas as pd from pyspark import pandas as ps from pyspark.testing.pandasutils import ComparisonTestBase from pyspark.testing.sqlutils import SQLTestUtils class FrameCovMixin: @unittest.skipIf( LooseVersion(pd.__version__) >= LooseVersion("2.0.0"), "TODO(SPARK-43809): Enable DataFrameSlowTests.test_cov for pandas 2.0.0.", ) def test_cov(self): # SPARK-36396: Implement DataFrame.cov # int pdf = pd.DataFrame([(1, 2), (0, 3), (2, 0), (1, 1)], columns=["a", "b"]) psdf = ps.from_pandas(pdf) self.assert_eq(pdf.cov(), psdf.cov(), almost=True) self.assert_eq(pdf.cov(min_periods=4), psdf.cov(min_periods=4), almost=True) self.assert_eq(pdf.cov(min_periods=5), psdf.cov(min_periods=5)) # ddof with self.assertRaisesRegex(TypeError, "ddof must be integer"): psdf.cov(ddof="ddof") for ddof in [-1, 0, 2]: self.assert_eq(pdf.cov(ddof=ddof), psdf.cov(ddof=ddof), almost=True) self.assert_eq( pdf.cov(min_periods=4, ddof=ddof), psdf.cov(min_periods=4, ddof=ddof), almost=True ) self.assert_eq(pdf.cov(min_periods=5, ddof=ddof), psdf.cov(min_periods=5, ddof=ddof)) # bool pdf = pd.DataFrame( { "a": [1, np.nan, 3, 4], "b": [True, False, False, True], "c": [True, True, False, True], } ) psdf = ps.from_pandas(pdf) self.assert_eq(pdf.cov(), psdf.cov(), almost=True) self.assert_eq(pdf.cov(min_periods=4), psdf.cov(min_periods=4), almost=True) self.assert_eq(pdf.cov(min_periods=5), psdf.cov(min_periods=5)) # extension dtype if LooseVersion(pd.__version__) >= LooseVersion("1.2"): numeric_dtypes = ["Int8", "Int16", "Int32", "Int64", "Float32", "Float64", "float"] boolean_dtypes = ["boolean", "bool"] else: numeric_dtypes = ["Int8", "Int16", "Int32", "Int64", "float"] boolean_dtypes = ["boolean", "bool"] sers = [pd.Series([1, 2, 3, None], dtype=dtype) for dtype in numeric_dtypes] sers += [pd.Series([True, False, True, None], dtype=dtype) for dtype in boolean_dtypes] sers.append(pd.Series([decimal.Decimal(1), decimal.Decimal(2), decimal.Decimal(3), None])) pdf = pd.concat(sers, axis=1) pdf.columns = [dtype for dtype in numeric_dtypes + boolean_dtypes] + ["decimal"] psdf = ps.from_pandas(pdf) if LooseVersion(pd.__version__) >= LooseVersion("1.2"): self.assert_eq(pdf.cov(), psdf.cov(), almost=True) self.assert_eq(pdf.cov(min_periods=3), psdf.cov(min_periods=3), almost=True) self.assert_eq(pdf.cov(min_periods=4), psdf.cov(min_periods=4)) else: test_types = [ "Int8", "Int16", "Int32", "Int64", "float", "boolean", "bool", ] expected = pd.DataFrame( data=[ [1.0, 1.0, 1.0, 1.0, 1.0, 0.0000000, 0.0000000], [1.0, 1.0, 1.0, 1.0, 1.0, 0.0000000, 0.0000000], [1.0, 1.0, 1.0, 1.0, 1.0, 0.0000000, 0.0000000], [1.0, 1.0, 1.0, 1.0, 1.0, 0.0000000, 0.0000000], [1.0, 1.0, 1.0, 1.0, 1.0, 0.0000000, 0.0000000], [0.0, 0.0, 0.0, 0.0, 0.0, 0.3333333, 0.3333333], [0.0, 0.0, 0.0, 0.0, 0.0, 0.3333333, 0.3333333], ], index=test_types, columns=test_types, ) self.assert_eq(expected, psdf.cov(), almost=True) # string column pdf = pd.DataFrame( [(1, 2, "a", 1), (0, 3, "b", 1), (2, 0, "c", 9), (1, 1, "d", 1)], columns=["a", "b", "c", "d"], ) psdf = ps.from_pandas(pdf) self.assert_eq(pdf.cov(), psdf.cov(), almost=True) self.assert_eq(pdf.cov(min_periods=4), psdf.cov(min_periods=4), almost=True) self.assert_eq(pdf.cov(min_periods=5), psdf.cov(min_periods=5)) # nan np.random.seed(42) pdf = pd.DataFrame(np.random.randn(20, 3), columns=["a", "b", "c"]) pdf.loc[pdf.index[:5], "a"] = np.nan pdf.loc[pdf.index[5:10], "b"] = np.nan psdf = ps.from_pandas(pdf) self.assert_eq(pdf.cov(min_periods=11), psdf.cov(min_periods=11), almost=True) self.assert_eq(pdf.cov(min_periods=10), psdf.cov(min_periods=10), almost=True) # return empty DataFrame pdf = pd.DataFrame([("1", "2"), ("0", "3"), ("2", "0"), ("1", "1")], columns=["a", "b"]) psdf = ps.from_pandas(pdf) self.assert_eq(pdf.cov(), psdf.cov()) class FrameCovTests(FrameCovMixin, ComparisonTestBase, SQLTestUtils): pass if __name__ == "__main__": from pyspark.pandas.tests.computation.test_cov import * # noqa: F401 try: import xmlrunner testRunner = xmlrunner.XMLTestRunner(output="target/test-reports", verbosity=2) except ImportError: testRunner = None unittest.main(testRunner=testRunner, verbosity=2)