# # Licensed to the Apache Software Foundation (ASF) under one or more # contributor license agreements. See the NOTICE file distributed with # this work for additional information regarding copyright ownership. # The ASF licenses this file to You under the Apache License, Version 2.0 # (the "License"); you may not use this file except in compliance with # the License. You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. # import unittest import glob import os from distutils.version import LooseVersion import numpy as np import pandas as pd from pyspark import pandas as ps from pyspark.testing.pandasutils import PandasOnSparkTestCase, TestUtils class DataFrameSparkIOTestsMixin: """Test cases for big data I/O using Spark.""" @property def test_column_order(self): return ["i32", "i64", "f", "bhello"] @property def test_pdf(self): pdf = pd.DataFrame( { "i32": np.arange(20, dtype=np.int32) % 3, "i64": np.arange(20, dtype=np.int64) % 5, "f": np.arange(20, dtype=np.float64), "bhello": np.random.choice(["hello", "yo", "people"], size=20).astype("O"), }, columns=self.test_column_order, index=np.random.rand(20), ) return pdf def test_parquet_read(self): with self.temp_dir() as tmp: data = self.test_pdf self.spark.createDataFrame(data, "i32 int, i64 long, f double, bhello string").coalesce( 1 ).write.parquet(tmp, mode="overwrite") def check(columns): expected = pd.read_parquet(tmp, columns=columns) actual = ps.read_parquet(tmp, columns=columns) self.assertPandasEqual(expected, actual._to_pandas()) check(None) check(["i32", "i64"]) check(["i64", "i32"]) # check with pyspark patch. expected = pd.read_parquet(tmp) actual = ps.read_parquet(tmp) self.assertPandasEqual(expected, actual._to_pandas()) # When index columns are known pdf = self.test_pdf expected = ps.DataFrame(pdf) expected_idx = expected.set_index("bhello")[["f", "i32", "i64"]] actual_idx = ps.read_parquet(tmp, index_col="bhello")[["f", "i32", "i64"]] self.assert_eq( actual_idx.sort_values(by="f").to_spark().toPandas(), expected_idx.sort_values(by="f").to_spark().toPandas(), ) def test_parquet_read_with_pandas_metadata(self): with self.temp_dir() as tmp: expected1 = self.test_pdf path1 = "{}/file1.parquet".format(tmp) expected1.to_parquet(path1) self.assert_eq(ps.read_parquet(path1, pandas_metadata=True), expected1) expected2 = expected1.reset_index() path2 = "{}/file2.parquet".format(tmp) expected2.to_parquet(path2) self.assert_eq(ps.read_parquet(path2, pandas_metadata=True), expected2) expected3 = expected2.set_index("index", append=True) # There is a bug in `to_parquet` from pandas 1.5.0 when writing MultiIndex. # See https://github.com/pandas-dev/pandas/issues/48848 for the reported issue. if LooseVersion(pd.__version__) > LooseVersion("1.5.0"): expected_psdf = ps.read_parquet(path2, pandas_metadata=True).set_index( "index", append=True ) else: path3 = "{}/file3.parquet".format(tmp) expected3.to_parquet(path3) expected_psdf = ps.read_parquet(path3, pandas_metadata=True) self.assert_eq(expected_psdf, expected3) def test_parquet_write(self): with self.temp_dir() as tmp: pdf = self.test_pdf expected = ps.DataFrame(pdf) # Write out partitioned by one column expected.to_parquet(tmp, mode="overwrite", partition_cols="i32") # Reset column order, as once the data is written out, Spark rearranges partition # columns to appear first. actual = ps.read_parquet(tmp) self.assertFalse((actual.columns == self.test_column_order).all()) actual = actual[self.test_column_order] self.assert_eq( actual.sort_values(by="f").to_spark().toPandas(), expected.sort_values(by="f").to_spark().toPandas(), ) # Write out partitioned by two columns expected.to_parquet(tmp, mode="overwrite", partition_cols=["i32", "bhello"]) # Reset column order, as once the data is written out, Spark rearranges partition # columns to appear first. actual = ps.read_parquet(tmp) self.assertFalse((actual.columns == self.test_column_order).all()) actual = actual[self.test_column_order] self.assert_eq( actual.sort_values(by="f").to_spark().toPandas(), expected.sort_values(by="f").to_spark().toPandas(), ) # Set `compression` with string expected.to_parquet(tmp, mode="overwrite", partition_cols="i32", compression="none") actual = ps.read_parquet(tmp) self.assertFalse((actual.columns == self.test_column_order).all()) actual = actual[self.test_column_order] self.assert_eq( actual.sort_values(by="f").to_spark().toPandas(), expected.sort_values(by="f").to_spark().toPandas(), ) # Test `options` parameter expected.to_parquet( tmp, mode="overwrite", partition_cols="i32", options={"compression": "none"} ) actual = ps.read_parquet(tmp) self.assertFalse((actual.columns == self.test_column_order).all()) actual = actual[self.test_column_order] self.assert_eq( actual.sort_values(by="f").to_spark().toPandas(), expected.sort_values(by="f").to_spark().toPandas(), ) def test_table(self): with self.table("test_table"): pdf = self.test_pdf expected = ps.DataFrame(pdf) # Write out partitioned by one column expected.spark.to_table("test_table", mode="overwrite", partition_cols="i32") # Reset column order, as once the data is written out, Spark rearranges partition # columns to appear first. actual = ps.read_table("test_table") self.assertFalse((actual.columns == self.test_column_order).all()) actual = actual[self.test_column_order] self.assert_eq( actual.sort_values(by="f").to_spark().toPandas(), expected.sort_values(by="f").to_spark().toPandas(), ) # Write out partitioned by two columns expected.to_table("test_table", mode="overwrite", partition_cols=["i32", "bhello"]) # Reset column order, as once the data is written out, Spark rearranges partition # columns to appear first. actual = ps.read_table("test_table") self.assertFalse((actual.columns == self.test_column_order).all()) actual = actual[self.test_column_order] self.assert_eq( actual.sort_values(by="f").to_spark().toPandas(), expected.sort_values(by="f").to_spark().toPandas(), ) # When index columns are known expected_idx = expected.set_index("bhello")[["f", "i32", "i64"]] actual_idx = ps.read_table("test_table", index_col="bhello")[["f", "i32", "i64"]] self.assert_eq( actual_idx.sort_values(by="f").to_spark().toPandas(), expected_idx.sort_values(by="f").to_spark().toPandas(), ) expected_idx = expected.set_index(["bhello"])[["f", "i32", "i64"]] actual_idx = ps.read_table("test_table", index_col=["bhello"])[["f", "i32", "i64"]] self.assert_eq( actual_idx.sort_values(by="f").to_spark().toPandas(), expected_idx.sort_values(by="f").to_spark().toPandas(), ) expected_idx = expected.set_index(["i32", "bhello"])[["f", "i64"]] actual_idx = ps.read_table("test_table", index_col=["i32", "bhello"])[["f", "i64"]] self.assert_eq( actual_idx.sort_values(by="f").to_spark().toPandas(), expected_idx.sort_values(by="f").to_spark().toPandas(), ) def test_spark_io(self): with self.temp_dir() as tmp: pdf = self.test_pdf expected = ps.DataFrame(pdf) # Write out partitioned by one column expected.to_spark_io(tmp, format="json", mode="overwrite", partition_cols="i32") # Reset column order, as once the data is written out, Spark rearranges partition # columns to appear first. actual = ps.read_spark_io(tmp, format="json") self.assertFalse((actual.columns == self.test_column_order).all()) actual = actual[self.test_column_order] self.assert_eq( actual.sort_values(by="f").to_spark().toPandas(), expected.sort_values(by="f").to_spark().toPandas(), ) # Write out partitioned by two columns expected.to_spark_io( tmp, format="json", mode="overwrite", partition_cols=["i32", "bhello"] ) # Reset column order, as once the data is written out, Spark rearranges partition # columns to appear first. actual = ps.read_spark_io(path=tmp, format="json") self.assertFalse((actual.columns == self.test_column_order).all()) actual = actual[self.test_column_order] self.assert_eq( actual.sort_values(by="f").to_spark().toPandas(), expected.sort_values(by="f").to_spark().toPandas(), ) # When index columns are known pdf = self.test_pdf expected = ps.DataFrame(pdf) col_order = ["f", "i32", "i64"] expected_idx = expected.set_index("bhello")[col_order] actual_idx = ps.read_spark_io(tmp, format="json", index_col="bhello")[col_order] self.assert_eq( actual_idx.sort_values(by="f").to_spark().toPandas(), expected_idx.sort_values(by="f").to_spark().toPandas(), ) # TODO(SPARK-40353): re-enabling the `test_read_excel`. @unittest.skip("openpyxl") def test_read_excel(self): with self.temp_dir() as tmp: path1 = "{}/file1.xlsx".format(tmp) self.test_pdf[["i32"]].to_excel(path1) self.assert_eq(ps.read_excel(open(path1, "rb")), pd.read_excel(open(path1, "rb"))) self.assert_eq( ps.read_excel(open(path1, "rb"), index_col=0), pd.read_excel(open(path1, "rb"), index_col=0), ) self.assert_eq( ps.read_excel(open(path1, "rb"), index_col=0, squeeze=True), pd.read_excel(open(path1, "rb"), index_col=0, squeeze=True), ) self.assert_eq(ps.read_excel(path1), pd.read_excel(path1)) self.assert_eq(ps.read_excel(path1, index_col=0), pd.read_excel(path1, index_col=0)) self.assert_eq( ps.read_excel(path1, index_col=0, squeeze=True), pd.read_excel(path1, index_col=0, squeeze=True), ) self.assert_eq(ps.read_excel(tmp), pd.read_excel(path1)) path2 = "{}/file2.xlsx".format(tmp) self.test_pdf[["i32"]].to_excel(path2) self.assert_eq( ps.read_excel(tmp, index_col=0).sort_index(), pd.concat( [pd.read_excel(path1, index_col=0), pd.read_excel(path2, index_col=0)] ).sort_index(), ) self.assert_eq( ps.read_excel(tmp, index_col=0, squeeze=True).sort_index(), pd.concat( [ pd.read_excel(path1, index_col=0, squeeze=True), pd.read_excel(path2, index_col=0, squeeze=True), ] ).sort_index(), ) with self.temp_dir() as tmp: path1 = "{}/file1.xlsx".format(tmp) with pd.ExcelWriter(path1) as writer: self.test_pdf.to_excel(writer, sheet_name="Sheet_name_1") self.test_pdf[["i32"]].to_excel(writer, sheet_name="Sheet_name_2") sheet_names = [["Sheet_name_1", "Sheet_name_2"], None] pdfs1 = pd.read_excel(open(path1, "rb"), sheet_name=None, index_col=0) pdfs1_squeezed = pd.read_excel( open(path1, "rb"), sheet_name=None, index_col=0, squeeze=True ) for sheet_name in sheet_names: psdfs = ps.read_excel(open(path1, "rb"), sheet_name=sheet_name, index_col=0) self.assert_eq(psdfs["Sheet_name_1"], pdfs1["Sheet_name_1"]) self.assert_eq(psdfs["Sheet_name_2"], pdfs1["Sheet_name_2"]) psdfs = ps.read_excel( open(path1, "rb"), sheet_name=sheet_name, index_col=0, squeeze=True ) self.assert_eq(psdfs["Sheet_name_1"], pdfs1_squeezed["Sheet_name_1"]) self.assert_eq(psdfs["Sheet_name_2"], pdfs1_squeezed["Sheet_name_2"]) self.assert_eq( ps.read_excel(tmp, index_col=0, sheet_name="Sheet_name_2"), pdfs1["Sheet_name_2"], ) for sheet_name in sheet_names: psdfs = ps.read_excel(tmp, sheet_name=sheet_name, index_col=0) self.assert_eq(psdfs["Sheet_name_1"], pdfs1["Sheet_name_1"]) self.assert_eq(psdfs["Sheet_name_2"], pdfs1["Sheet_name_2"]) psdfs = ps.read_excel(tmp, sheet_name=sheet_name, index_col=0, squeeze=True) self.assert_eq(psdfs["Sheet_name_1"], pdfs1_squeezed["Sheet_name_1"]) self.assert_eq(psdfs["Sheet_name_2"], pdfs1_squeezed["Sheet_name_2"]) path2 = "{}/file2.xlsx".format(tmp) with pd.ExcelWriter(path2) as writer: self.test_pdf.to_excel(writer, sheet_name="Sheet_name_1") self.test_pdf[["i32"]].to_excel(writer, sheet_name="Sheet_name_2") pdfs2 = pd.read_excel(path2, sheet_name=None, index_col=0) pdfs2_squeezed = pd.read_excel(path2, sheet_name=None, index_col=0, squeeze=True) self.assert_eq( ps.read_excel(tmp, sheet_name="Sheet_name_2", index_col=0).sort_index(), pd.concat([pdfs1["Sheet_name_2"], pdfs2["Sheet_name_2"]]).sort_index(), ) self.assert_eq( ps.read_excel( tmp, sheet_name="Sheet_name_2", index_col=0, squeeze=True ).sort_index(), pd.concat( [pdfs1_squeezed["Sheet_name_2"], pdfs2_squeezed["Sheet_name_2"]] ).sort_index(), ) for sheet_name in sheet_names: psdfs = ps.read_excel(tmp, sheet_name=sheet_name, index_col=0) self.assert_eq( psdfs["Sheet_name_1"].sort_index(), pd.concat([pdfs1["Sheet_name_1"], pdfs2["Sheet_name_1"]]).sort_index(), ) self.assert_eq( psdfs["Sheet_name_2"].sort_index(), pd.concat([pdfs1["Sheet_name_2"], pdfs2["Sheet_name_2"]]).sort_index(), ) psdfs = ps.read_excel(tmp, sheet_name=sheet_name, index_col=0, squeeze=True) self.assert_eq( psdfs["Sheet_name_1"].sort_index(), pd.concat( [pdfs1_squeezed["Sheet_name_1"], pdfs2_squeezed["Sheet_name_1"]] ).sort_index(), ) self.assert_eq( psdfs["Sheet_name_2"].sort_index(), pd.concat( [pdfs1_squeezed["Sheet_name_2"], pdfs2_squeezed["Sheet_name_2"]] ).sort_index(), ) def test_read_orc(self): with self.temp_dir() as tmp: path = "{}/file1.orc".format(tmp) data = self.test_pdf self.spark.createDataFrame(data, "i32 int, i64 long, f double, bhello string").coalesce( 1 ).write.orc(path, mode="overwrite") expected = data.reset_index()[data.columns] actual = ps.read_orc(path) self.assertPandasEqual(expected, actual._to_pandas()) # columns columns = ["i32", "i64"] expected = data.reset_index()[columns] actual = ps.read_orc(path, columns=columns) self.assertPandasEqual(expected, actual._to_pandas()) # index_col expected = data.set_index("i32") actual = ps.read_orc(path, index_col="i32") self.assert_eq(actual, expected) expected = data.set_index(["i32", "f"]) actual = ps.read_orc(path, index_col=["i32", "f"]) self.assert_eq(actual, expected) # index_col with columns expected = data.set_index("i32")[["i64", "bhello"]] actual = ps.read_orc(path, index_col=["i32"], columns=["i64", "bhello"]) self.assert_eq(actual, expected) expected = data.set_index(["i32", "f"])[["bhello", "i64"]] actual = ps.read_orc(path, index_col=["i32", "f"], columns=["bhello", "i64"]) self.assert_eq(actual, expected) msg = "Unknown column name 'i'" with self.assertRaises(ValueError, msg=msg): ps.read_orc(path, columns="i32") msg = "Unknown column name 'i34'" with self.assertRaises(ValueError, msg=msg): ps.read_orc(path, columns=["i34", "i64"]) def test_orc_write(self): with self.temp_dir() as tmp: pdf = self.test_pdf expected = ps.DataFrame(pdf) # Write out partitioned by one column expected.to_orc(tmp, mode="overwrite", partition_cols="i32") # Reset column order, as once the data is written out, Spark rearranges partition # columns to appear first. actual = ps.read_orc(tmp) self.assertFalse((actual.columns == self.test_column_order).all()) actual = actual[self.test_column_order] self.assert_eq( actual.sort_values(by="f").to_spark().toPandas(), expected.sort_values(by="f").to_spark().toPandas(), ) # Write out partitioned by two columns expected.to_orc(tmp, mode="overwrite", partition_cols=["i32", "bhello"]) # Reset column order, as once the data is written out, Spark rearranges partition # columns to appear first. actual = ps.read_orc(tmp) self.assertFalse((actual.columns == self.test_column_order).all()) actual = actual[self.test_column_order] self.assert_eq( actual.sort_values(by="f").to_spark().toPandas(), expected.sort_values(by="f").to_spark().toPandas(), ) # Test `options` parameter expected.to_orc( tmp, mode="overwrite", partition_cols="i32", options={"compression": "none"} ) # Reset column order, as once the data is written out, Spark rearranges partition # columns to appear first. actual = ps.read_orc(tmp) self.assertFalse((actual.columns == self.test_column_order).all()) actual = actual[self.test_column_order] self.assert_eq( actual.sort_values(by="f").to_spark().toPandas(), expected.sort_values(by="f").to_spark().toPandas(), ) class DataFrameSparkIOTests(DataFrameSparkIOTestsMixin, PandasOnSparkTestCase, TestUtils): pass if __name__ == "__main__": from pyspark.pandas.tests.test_dataframe_spark_io import * # noqa: F401 try: import xmlrunner testRunner = xmlrunner.XMLTestRunner(output="target/test-reports", verbosity=2) except ImportError: testRunner = None unittest.main(testRunner=testRunner, verbosity=2)